l12_proto.h File Reference

#include <stdint.h>
#include <sys/types.h>
#include <unistd.h>
#include <stdio.h>
#include <math.h>
#include <stdlib.h>
#include <libgen.h>
#include <string.h>
#include <ctype.h>
#include <netcdf.h>
#include "input_struc.h"
#include "l12_parms.h"
#include "l1_struc.h"
#include "l1q_struc.h"
#include "l2_struc.h"
#include "target_struc.h"
#include "vcal_struc.h"
#include "filehandle.h"
#include "filter.h"
#include "l2_flags.h"
#include <timeutils.h>
#include "genutils.h"
#include "aer_struc.h"
#include "l2prod.h"
#include "l2prod_struc.h"
#include "dfutils.h"
#include "allocate2d.h"
#include "xcal.h"
#include "epr_api.h"
#include "scene_meta.h"
#include "l2_hdf_generic.h"
#include "flags_iop.h"
#include "table_io_wrapper.h"
#include <clo.h>
#include "navigation.h"
#include "read_l3bin.h"
#include "par_utils.h"
#include "smile.h"
#include "get_nitrate.h"

Include dependency graph for l12_proto.h:

Go to the source code of this file.

Macros
#define	AGZONE0   0
#define	AGZONE1   640
#define	AGZONE2   1008
#define	AGZONE3   1600
#define	AGZONE4   2192
#define	AGZONE5   2560
#define	INSTITUTION   "NASA Goddard Space Flight Center, Ocean Ecology Laboratory, Ocean Biology Processing Group"
#define	LICENSE   "https://science.nasa.gov/earth-science/earth-science-data/data-information-policy/"
#define	NAMING_AUTHORITY   "gov.nasa.gsfc.sci.oceandata"
#define	KEYWORDS_VOCABULARY   "NASA Global Change Master Directory (GCMD) Science Keywords"
#define	STDNAME_VOCABULARY   "CF Standard Name Table v36"
#define	CREATOR_NAME   "NASA/GSFC/OBPG"
#define	CREATOR_EMAIL   "data@oceancolor.gsfc.nasa.gov"
#define	CREATOR_URL   "https://oceandata.sci.gsfc.nasa.gov"
#define	PROJECT   "Ocean Biology Processing Group (NASA/GSFC/OBPG)"
#define	PUBLISHER_NAME   "NASA/GSFC/OBPG"
#define	PUBLISHER_EMAIL   "data@oceancolor.gsfc.nasa.gov"
#define	PUBLISHER_URL   "https://oceandata.sci.gsfc.nasa.gov"

Functions
void	filehandle_init (filehandle *file)
int	getl1rec (int32_t recnum, int32_t dscan, l1str *l1rec)
int	loadl1 (filehandle *l1file, l1str *l1rec)
int	openl1 (filehandle *l1file)
int	readl1 (filehandle *l1file, int32_t recnum, l1str *l1rec)
int	readl1_lonlat (filehandle *l1file, int32_t recnum, l1str *l1rec)
int	writel1 (filehandle *l1file, int32_t recnum, l1str *l1rec)
void	closel1 (filehandle *l1file)
void	closel1_generic (filehandle *l1file)
int	openl1_read_hdf (filehandle *l1file)
int	openl1_write_hdf (filehandle *l1file)
int	openl1_write (filehandle *l1file)
int	writel1_hdf (filehandle *l1file, int32_t recnum, l1str *l1rec)
void	closel1_hdf (filehandle *l1file)
int	openl2 (filehandle *l2file)
int	writel2 (filehandle *l2file, int32_t recnum, l2str *l2rec, int outfile_number)
int	closel2 (filehandle *l2file)
void	update_flag_cnts (int32_t *flag_cnt, int32_t *flags, int32_t nflags, int32_t npix, uint32_t init_mask)
void	update_flag_cnts16 (int32_t *flag_cnt, int16_t *flags, int32_t nflags, int32_t npix, uint32_t init_mask)
void	update_qual_cnts (int32_t *flag_cnt, int8_t *flags, int32_t nflags, int32_t npix)
int	write_flag_pcnts (idDS ds_id, FILE *fpmeta, int32_t *flag_cnt, int32_t nflags, const char *const flag_lname[], int32_t numScans, int32_t numPixels)
int	write_qual_flag_pcnts (idDS ds_id, FILE *fpmeta, int32_t *flag_cnt, int32_t nflags, const char *const flag_lname[])
int	open_target (filehandle *file)
int	read_target (filehandle *file, int32_t recnum, tgstr *tgrec)
void	close_target (void)
int	open_aer (filehandle *file)
int	read_aer (filehandle *file, int32_t recnum, aestr *aerec)
void	close_aer (filehandle *file)
void	init_l1 (l1str *l1rec)
void	init_l2 (l2str *l2rec, int32_t nbands)
void	free_l1q (void)
int32_t	alloc_l1 (filehandle *l1file, l1str *l1rec)
void	free_l1 (l1str *l1rec)
int32_t	alloc_l2 (l1str *l1rec, l2str *l2rec)
void	free_l2 (l2str *l2rec)
int32_t	alloc_target (int32_t npix, int32_t nbands, tgstr *tgrec)
int32_t	alloc_aer (int32_t npix, int32_t nbands, aestr *aerec)
void	init_l2prod ()
l2prodstr *	get_l2prod_index (char *name, int32 sensorID, int32 numBands, int32 numPixels, int32 numScans, int32_t *wave)
void	write_product_XML_file (char *filename)
int32	prodlist (int32 sensorID, int32 evalmask, const char *inprod, const char *defprod, char outprod[MAXPROD][32])
int	convl12 (l1str *l1rec, l2str *l2rec, int32_t spix, int32_t epix, aestr *aerec)
int	convl21 (l2str *l2rec, tgstr *tgrec, int32_t spix, int32_t epix, float *Lt, vcstr *vrec)
int32	l2_seawifs (filehandle *l1file, filehandle *l2file)
int32	l1b_seawifs (filehandle *l1file, filehandle *ofile, int32 sscan, int32 escan, int32 dscan, int32 spixl, int32 epixl, int32 dpixl)
int32	get_modis_calfile (int32 sd_id, char *file)
int	setanc (l1str *l1rec)
int	setflags (l1str *l1rec)
void	setflagbits (int level, l1str *l1rec, l2str *l2rec, int32_t ipix)
void	l1_mask_set (l1str *l1rec, int32_t ip)
int	modis_cloud_mask (l1str *l1rec, int32_t ip)
int	modis_cirrus_mask (l1str *l1rec, int32_t ip)
void	cpl1rec (l1str *l1new, l1str *l1old)
int	b128_msk_init (char *landfile, int msknum)
int	b128_msk_get (float lat, float lon, int msknum)
int	land_mask_init (char *file)
int	land_mask (float lat, float lon)
int	bath_mask_init (char *file)
int	bath_mask (float lat, float lon)
int	get_height (char *demfile, l1str *l1rec, int32_t ip, int terrain_corrected)
void	free_deminfo ()
int32_t	rdsensorinfo (int32_t sensorID, int32_t evalmask, const char *pname, void **pval)
void	lowercase (char *s)
void	atmocor1 (l1str *l1rec, int32_t ip)
int	atmocor2 (l2str *l2rec, aestr *aerec, int32_t ip)
void	whitecaps (int32_t sensorID, int32_t evalmask, int32_t nwave, float ws, float ws_max, float rhof[])
void	rayleigh (l1str *l1rec, int32_t ip)
int	aerosol (l2str *l2rec, int32_t aer_opt_in, aestr *aerec, int32_t ip, float wave[], int32_t nwave, int32_t nir_s_in, int32_t nir_l_in, float F0_in[], float La1_in[], float La2_out[], float t_sol_out[], float t_sen_out[], float *eps, float taua_out[], int32_t *modmin, int32_t *modmax, float *modrat, int32_t *modmin2, int32_t *modmax2, float *modrat2)
void	gaseous_transmittance (l1str *l1rec, int32_t ip)
float	ky_airmass (float theta)
float	pp_airmass (float theta)
void	get_rhown_nir (char *fqfile, float Rrs[], float wave[], int32_t nir_s, int32_t nir_l, float aw[], float bbw[], float chl, float rhown[])
void	get_rhown_eval (char *fqfile, float Rrs[], float wave[], int32_t nir_s, int32_t nir_l, int32_t nwave, float aw[], float bbw[], float chl, float solz, float senz, float phi, float rhown[])
void	get_rho_mumm (l2str *l2rec, int32_t ip, int32_t iw, float *rhom)
void	get_rhown_mumm (l2str *l2rec, int32_t ip, int32_t nir_s, int32_t nir_l, float rhown[])
void	glint_rad (int32_t num_iter, int32_t nband, int32_t nir_s, int32_t nir_l, float glint_coef, float air_mass, float mu0, float F0[], float taur[], float taua[], float La[], float TLg[])
float	fresnel_coef (float mu, float n)
float	fresnel_sen (float senz, int return_tf)
void	fresnel_sol (float wave[], int32_t nwave, float solz, float ws, float brdf[], int return_tf)
void	foqint_morel (char *file, float wave[], int32_t nwave, float solz, float senzp, float phi, float chl, float brdf[])
void	qint_morel (float wave[], int32_t nwave, float solz, float chl, float Qn[])
void	gothic_R (float wave[], int32_t nwave, float solz, float senz, float ws, float R[])
int	ocbrdf (l2str *l2rec, int32_t ip, int32_t brdf_opt, float wave[], int32_t nwave, float solz, float senz, float phi, float ws, float chl, float nLw[], float Fo[], float brdf[])
void	nlw_outband (int32_t evalmask, int32_t sensorID, float wave[], int32_t nwave, float Lw[], float nLw[])
int	l2gen_usage (const char *prog)
int	msl12_input_defaults (filehandle *l1file)
void	msl12_input_init ()
int	l2gen_init_options (clo_optionList_t *list, const char *prog)
int	msl12_option_input (int argc, char *argv[], clo_optionList_t *list, char *progName, filehandle *l1file)
int	msl12_input (int argc, char *argv[], const char *progName, filehandle *l1file)
int	l1subpix (filehandle *l1file, l1str *l1rec)
int	windex (float wave, float twave[], int ntwave)
int	invbindx (int band, int32_t *bindx, int nbands)
void	bindex_set (int32_t wave[], int nwave, int dwave)
int	windex_get (int32_t wave)
int	bindex_get (int32_t wave)
int	bindex_get_555 (void)
float	bin_climatology (char *l3file, int32_t day, float lon, float lat, char *prodname)
float	get_default_chl (l2str *l2rec, float Rrs[])
void	get_chl (l2str *l2rec, int prodnum, float prod[])
void	get_las (l2str *l2rec, l2prodstr *p, float prod[])
void	get_tsm (l2str *l2rec, int prodnum, float prod[])
void	get_poc (l2str *l2rec, int prodnum, float prod[])
void	get_flh (l2str *l2rec, float flh[])
void	get_fsat (l2str *l2rec, float flh[])
void	get_fsat2 (l2str *l2rec, float flh[])
void	get_fqy (l2str *l2rec, float fqy[])
void	get_fqy2 (l2str *l2rec, float fqy[])
void	get_ipar (l2str *l2rec, float ipar[])
void	get_ipar2 (l2str *l2rec, float ipar[])
void	get_depth (l2str *l2rec, float depth[])
void	get_par (l2str *l2rec, float par[])
void	get_bsi (l2str *l2rec, float BSi[])
void	get_ssn (l2str *l2rec, float ssn[])
void	get_angstrom (l2str *l2rec, int band, float angst[])
void	get_ms_epsilon (l2str *l2rec, float eps[])
void	get_es (l2str *l2rec, int band, float es[])
void	get_toa_refl (l2str *l2rec, int band, float rhot[])
void	get_dust_index (l2str *l2rec, float dust[])
void	get_ndvi_evi (l1str *l1rec, int prodnum, float prod[])
void	get_ndvi (l1str *l1rec, float ndvi[])
void	get_evi (l1str *l1rec, float evi[])
void	get_evi2 (l1str *l1rec, float evi2[])
void	get_evi3 (l1str *l1rec, float evi3[])
void	get_smoke (l2str *l2rec, float smoke[])
void	get_Kd (l2str *l2rec, l2prodstr *p, float Kd[])
void	get_photic_depth (l2str *l2rec, l2prodstr *p, float Z[])
void	cdom_morel (l2str *l2rec, l2prodstr *p, float prod[])
void	cdom_mannino (l2str *l2rec, int prodnum, float prod[])
void	vcal (l2str *l2rec, l2prodstr *p, float vcal[])
double *	get_xcal (l1str *l1rec, int type, int bandnum)
double *	get_fpm_xcal (char *fpm_file)
float	aw_spectra (int32_t wl, int32_t width)
float	bbw_spectra (int32_t wl, int32_t width)
void	get_aw_bbw (l2str *l2rec, float wave[], int nwave, float *aw, float *bbw)
float	seawater_nsw (float wave, float sst, float sss, float *dnswds)
float	seawater_bb (float wave, float sst, float sss, double delta)
void	seawater_set (l1str *l1rec)
float	seawater_get_n (int32_t ip, int32_t ib)
float	seawater_get_a (int32_t ip, int32_t ib)
float	seawater_get_bb (int32_t ip, int32_t ib)
void	get_bbws (l2str *l2rec, l2prodstr *p, float prod[])
int	atmocor1_land (l1str *l1rec, int32_t ip)
void	polcor (l1str *l1rec, int32_t ip)
int	get_rhos (l1str *l1rec, int32_t ip)
int8 *	get_qual_sst (l2str *l2rec)
int8 *	get_qual_sst4 (l2str *l2rec)
int8 *	get_qual_sst_triple (l2str *l2rec)
int16 *	get_flags_sst (l2str *l2rec)
int16 *	get_flags_sst4 (l2str *l2rec)
int16 *	get_flags_sst_triple (l2str *l2rec)
float *	get_sst_dust_correction (l2str *l2rec)
float *	get_sst (l2str *l2rec)
float *	get_sst4 (l2str *l2rec)
float *	get_sst_triple (l2str *l2rec)
float *	get_bias_sst (l2str *l2rec)
float *	get_bias_sst4 (l2str *l2rec)
float *	get_bias_sst_triple (l2str *l2rec)
float *	get_stdv_sst (l2str *l2rec)
float *	get_stdv_sst4 (l2str *l2rec)
float *	get_stdv_sst_triple (l2str *l2rec)
float *	get_bias_mean_sst (l2str *l2rec)
float *	get_bias_mean_sst4 (l2str *l2rec)
float *	get_bias_mean_sst_triple (l2str *l2rec)
int16 *	get_counts_sst (l2str *l2rec)
int16 *	get_counts_sst4 (l2str *l2rec)
int16 *	get_counts_sst_triple (l2str *l2rec)
void	radiance2bt (l1str *l1rec, int resolution)
float	get_sstref (short reftyp, char *file, l1str *l1rec, int32_t ip)
float	get_sssref (char *file, float lon, float lat, int day)
void	calcite (l2str *l2rec, l2prodstr *p, float caco3[])
void	tindx_morel (l2str *l2rec, int32_t ip, float *tindx)
void	tindx_shi (l2str *l2rec, int32_t ip, float *tindx)
float	conv_rrs_to_555 (float Rrs, float wave)
float	water_vapor (int ib, float wv, float airmass)
int	ice_mask_init (char *file, int year, int day, float threshold)
char	ice_mask (float lon, float lat)
float	ice_fraction (float lon, float lat)
void	get_ice_frac (l2str *l2rec, float ice[])
void	get_tauc (l2str *l2rec, float tauc[])
void	get_mgiop (l2str *l2rec, l2prodstr *p, float prod[])
void	get_gsm (l2str *l2rec, l2prodstr *p, float prod[])
int16 *	get_iter_gsm (l2str *l2rec)
void	iops_gsm (l2str *l2rec)
void	get_giop (l2str *l2rec, l2prodstr *p, float prod[])
int16 *	get_iter_giop (l2str *l2rec)
int16 *	get_flags_giop (l2str *l2rec)
void	iops_giop (l2str *l2rec)
void	get_carder (l2str *l2rec, l2prodstr *p, float prod[])
int16 *	get_flags_carder (l2str *l2rec)
void	iops_carder (l2str *l2rec)
void	chl_carder_empirical (l2str *l2rec, float prod[])
void	get_pml (l2str *l2rec, l2prodstr *p, float prod[])
void	iops_pml (l2str *l2rec)
void	get_qaa (l2str *l2rec, l2prodstr *p, float prod[])
unsigned char *	get_flags_qaa (l2str *l2rec)
void	iops_qaa (l2str *l2rec)
void	get_niwa (l2str *l2rec, l2prodstr *p, float prod[])
void	iops_niwa (l2str *l2rec)
int16 *	get_flags_niwa (l2str *l2rec)
void	iops_las (l2str *l2rec)
int	get_bbp_qaa (l2str *l2rec, int ip, float tab_wave[], float tab_bbp[], int tab_nwave)
int	get_bbp_las (l2str *l2rec, int ip, float tab_wave[], float tab_bbp[], int tab_nwave)
float	get_bbp_las_eta (l2str *l2rec, int ip)
float	get_bbp_las_eta_ksm (l2str *l2rec, int ip)
void	get_iops (l2str *l2rec, int32_t iop_opt)
void	set_iop_flag (float32 wave[], int32 nwave, float32 a[], float32 aph[], float32 adg[], float32 bb[], float32 bbp[], int16 *flag)
float	aph_bricaud (float wave, float chl)
float	aph_ciotti (float wave, float sf)
float	get_aphstar (float wave, int dwave, int ftype, float proxy)
float	rrs_above_to_below (float Rrs)
void	optical_class (l2str *l2rec, l2prodstr *p, float prod[])
float *	get_class_ward_owmc (l2str *l2rec)
float *	get_class_k_owmc (l2str *l2rec)
float *	get_class_34k_w_owmc (l2str *l2rec)
int	get_f0_neckel (int32_t wl, int32_t width, float *f0)
int	get_f0_thuillier (int32_t wl, int32_t width, float *f0)
void	get_f0_thuillier_ext (int32_t wl, int32_t width, float *f0)
float32	westernmost (float32 lon1, float32 lon2)
float32	easternmost (float32 lon1, float32 lon2)
void	fctl_init (fctlstr *fctl)
int	fctl_set (fctlstr *fctl, int32_t npix, char *fname, int32_t band, int32_t nx, int32_t ny, int32_t minfill, int32_t nbands)
void	filter (fctlstr *fctl, l1qstr *l1que, l1str *l1rec, int32_t dscan)
int	rdfilter (char *file, fctlstr *fctl, int32_t nbands)
void	fdilate (l1qstr *l1que, int32_t nx, int32_t ny, int flag, char kernel[], l1str *l1rec)
void	fclean (l1qstr *l1que, int32_t nx, int32_t ny, int flag, char kernel[], l1str *l1rec)
void	fLTmean (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fLTRmean (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fLTmed (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fLTRmed (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fEPSmean (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fEPSiqmean (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fLTRiqmean (l1qstr *l1que, int32_t nx, int32_t ny, int ib, int32_t minfill, char kernel[], l1str *l1rec)
void	fLTrat (l1qstr *l1que, int32_t nx, int32_t ny, l1str *l1rec)
void	viirs_pxcvt_2uag (int, int *, int *)
void	viirs_pxcvt_2ag (int, int *)
void	viirs_pxcvt_agdel (int, int, int *)
void	flag_bowtie_deleted (l1str *l1rec, size_t ipix, int extract_offset)
void	sunangs_ (int *iyr, int *iday, float *gmt, float *xlon, float *ylat, float *sunz, float *suna)
int	getglint_ (float *, float *, float *, float *, float *, float *)
int	getglint_iqu_ (float *, float *, float *, float *, float *, float *, float *, float *)
double	esdist_ (int32_t *year, int32_t *day, int32_t *msec)
void	get_um_prod_ (int32_t *idProd, int32_t *pix, float *val)
void	clear_um_prod_ ()
void	get_fdiff (l2str *l2rec, float fdiff[])
void	get_cdom_morel (l2str *l2rec, l2prodstr *p, float prod[])
void	optical_water_type (l2str *l2rec, l2prodstr *p, void *vptr)
VOIDP	prodgen (l2prodstr *p, l2str *l2rec)
void	virtual_constellation (l2str *l2rec, l2prodstr *p, float prod[])
void	bioOptBandShift (l2str *l2rec, l2prodstr *p, float prod[])
void	get_swim (l2str *l2rec, l2prodstr *p, float prod[])
void	iops_swim (l2str *l2rec)
int	compfloat (float *x, float *y)
void	elev_init (char *elevFilename, char *elevAuxFilename)
float	get_elev (float lat, float lon)
int	read_target_l3 (filehandle *file, l1str *l1rec, int32_t nbands, tgstr *tgrec)
int	ncio_dim_siz (int, char *)
int	ncio_grab_f_ds (int, char *, float *)
int	ncio_grab_stdsclf_ds (int, char *, float, float *)
float	get_mld (char *mldfile, float lon, float lat, int day)
void	get_pft_hirata (l2str *l2rec, l2prodstr *p, float prod[])
void	get_pft_uitz (l2str *l2rec, l2prodstr *p, float prod[])
void	get_npp (l2str *l2rec, int32_t, float prod[])
float	chl_abi (l2str *l2rec, float nLw[])
void	run_raman_cor (l2str *l2rec, int ip)
void	get_bpar (l2str *l2rec, l2prodstr *p, float prod[])
void	get_habs_ci (l2str *l2rec, l2prodstr *p, float ci[])
void	get_habs_mph (l2str *l2rec, l2prodstr *p, float mph_chl[])
uint8_t *	get_flags_habs_mph (l2str *l2rec)
uint8_t *	get_flags_habs (l2str *l2rec)
char	get_cldmask (l1str *l1rec, int32_t ip)
void	get_psd_ksm (l2str *l2rec, l2prodstr *p, float prod[])
int	init_geom_per_band (l1str *)
int	geom_per_band_deriv (l1str *)
int	destroy_geom_per_band (geom_struc *)
float *	giop_get_aph_pointer ()
float *	giop_get_adg_pointer ()
float *	giop_get_bbp_pointer ()
float *	giop_get_bbp_s_pointer ()
void	run_giop (l2str *l2rec)
int	giop_ran (int recnum)

Variables
instr *	input

Macro Definition Documentation

AGZONE0

#define AGZONE0   0

Definition at line 53 of file l12_proto.h.

AGZONE1

#define AGZONE1   640

Definition at line 54 of file l12_proto.h.

AGZONE2

#define AGZONE2   1008

Definition at line 55 of file l12_proto.h.

AGZONE3

#define AGZONE3   1600

Definition at line 56 of file l12_proto.h.

AGZONE4

#define AGZONE4   2192

Definition at line 57 of file l12_proto.h.

AGZONE5

#define AGZONE5   2560

Definition at line 58 of file l12_proto.h.

CREATOR_EMAIL

#define CREATOR_EMAIL   "data@oceancolor.gsfc.nasa.gov"

Definition at line 67 of file l12_proto.h.

CREATOR_NAME

#define CREATOR_NAME   "NASA/GSFC/OBPG"

Definition at line 66 of file l12_proto.h.

CREATOR_URL

#define CREATOR_URL   "https://oceandata.sci.gsfc.nasa.gov"

Definition at line 68 of file l12_proto.h.

INSTITUTION

#define INSTITUTION   "NASA Goddard Space Flight Center, Ocean Ecology Laboratory, Ocean Biology Processing Group"

Definition at line 61 of file l12_proto.h.

KEYWORDS_VOCABULARY

#define KEYWORDS_VOCABULARY   "NASA Global Change Master Directory (GCMD) Science Keywords"

Definition at line 64 of file l12_proto.h.

LICENSE

#define LICENSE   "https://science.nasa.gov/earth-science/earth-science-data/data-information-policy/"

Definition at line 62 of file l12_proto.h.

NAMING_AUTHORITY

#define NAMING_AUTHORITY   "gov.nasa.gsfc.sci.oceandata"

Definition at line 63 of file l12_proto.h.

PROJECT

#define PROJECT   "Ocean Biology Processing Group (NASA/GSFC/OBPG)"

Definition at line 69 of file l12_proto.h.

PUBLISHER_EMAIL

#define PUBLISHER_EMAIL   "data@oceancolor.gsfc.nasa.gov"

Definition at line 71 of file l12_proto.h.

PUBLISHER_NAME

#define PUBLISHER_NAME   "NASA/GSFC/OBPG"

Definition at line 70 of file l12_proto.h.

PUBLISHER_URL

#define PUBLISHER_URL   "https://oceandata.sci.gsfc.nasa.gov"

Definition at line 72 of file l12_proto.h.

STDNAME_VOCABULARY

#define STDNAME_VOCABULARY   "CF Standard Name Table v36"

Definition at line 65 of file l12_proto.h.

Function Documentation

aerosol()

int aerosol	(	l2str *	l2rec,
		int32_t	aer_opt_in,
		aestr *	aerec,
		int32_t	ip,
		float	wave[],
		int32_t	nwave,
		int32_t	nir_s_in,
		int32_t	nir_l_in,
		float	F0_in[],
		float	La1_in[],
		float	La2_out[],
		float	t_sol_out[],
		float	t_sen_out[],
		float *	eps,
		float	taua_out[],
		int32_t *	modmin,
		int32_t *	modmax,
		float *	modrat,
		int32_t *	modmin2,
		int32_t *	modmax2,
		float *	modrat2
	)

Definition at line 4134 of file aerosol.c.

alloc_aer()

int32_t alloc_aer	(	int32_t	npix,
		int32_t	nbands,
		aestr *	aerec
	)

Definition at line 12 of file alloc_aer.c.

alloc_l1()

int32_t alloc_l1	(	filehandle *	l1file,
		l1str *	l1rec
	)

Definition at line 17 of file alloc_l1.c.

alloc_l2()

int32_t alloc_l2	(	l1str *	l1rec,
		l2str *	l2rec
	)

Definition at line 17 of file alloc_l2.c.

alloc_target()

int32_t alloc_target	(	int32_t	npix,
		int32_t	nbands,
		tgstr *	tgrec
	)

Definition at line 12 of file alloc_target.c.

aph_bricaud()

float aph_bricaud	(	float	wave,
		float	chl
	)

Definition at line 181 of file aph.c.

aph_ciotti()

float aph_ciotti	(	float	wave,
		float	sf
	)

Definition at line 190 of file aph.c.

atmocor1()

void atmocor1	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 39 of file atmocor1.c.

atmocor1_land()

int atmocor1_land	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 16 of file atmocor1_land.c.

atmocor2()

int atmocor2	(	l2str *	l2rec,
		aestr *	aerec,
		int32_t	ip
	)

Definition at line 11 of file atmocor2.c.

aw_spectra()

float aw_spectra	(	int32_t	wl,
		int32_t	width
	)

Definition at line 105 of file water_spectra.c.

b128_msk_get()

int b128_msk_get	(	float	lat,
		float	lon,
		int	msknum
	)

Definition at line 183 of file b128_msk_get.c.

b128_msk_init()

int b128_msk_init	(	char *	landfile,
		int	msknum
	)

Definition at line 30 of file b128_msk_get.c.

bath_mask()

int bath_mask	(	float	lat,
		float	lon
	)

Definition at line 59 of file read_mask.c.

bath_mask_init()

int bath_mask_init

(

char *

file

)

Definition at line 53 of file read_mask.c.

bbw_spectra()

float bbw_spectra	(	int32_t	wl,
		int32_t	width
	)

Definition at line 142 of file water_spectra.c.

bin_climatology()

float bin_climatology	(	char *	l3file,
		int32_t	day,
		float	lon,
		float	lat,
		char *	prodname
	)

Definition at line 287 of file bin_climatology.c.

bindex_get()

int bindex_get

(

int32_t

wave

)

Definition at line 43 of file windex.c.

bindex_get_555()

int bindex_get_555

(

void

)

Definition at line 55 of file windex.c.

bindex_set()

void bindex_set	(	int32_t	wave[],
		int	nwave,
		int	dwave
	)

Definition at line 13 of file windex.c.

bioOptBandShift()

void bioOptBandShift	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 52 of file bioOptBandShift.c.

calcite()

void calcite	(	l2str *	l2rec,
		l2prodstr *	p,
		float	caco3[]
	)

Definition at line 514 of file calcite.c.

cdom_mannino()

void cdom_mannino	(	l2str *	l2rec,
		int	prodnum,
		float	prod[]
	)

Definition at line 7 of file cdom_mannino.c.

cdom_morel()

void cdom_morel	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

chl_abi()

float chl_abi	(	l2str *	l2rec,
		float	nLw[]
	)

Definition at line 432 of file get_chl.c.

chl_carder_empirical()

void chl_carder_empirical	(	l2str *	l2rec,
		float	prod[]
	)

Definition at line 1168 of file carder.c.

clear_um_prod_()

void clear_um_prod_

(

)

close_aer()

void close_aer

(

filehandle *

file

)

close_target()

void close_target

(

void

)

Definition at line 35 of file target_io.c.

closel1()

void closel1

(

filehandle *

l1file

)

Definition at line 69 of file l1_io.c.

closel1_generic()

void closel1_generic

(

filehandle *

l1file

)

Definition at line 765 of file l1_generic_write.c.

closel1_hdf()

void closel1_hdf

(

filehandle *

l1file

)

Definition at line 701 of file l1_hdf_generic_write.c.

closel2()

int closel2

(

filehandle *

l2file

)

Definition at line 1444 of file l2_generic.c.

compfloat()

int compfloat	(	float *	x,
		float *	y
	)

Definition at line 728 of file filter.c.

conv_rrs_to_555()

float conv_rrs_to_555	(	float	Rrs,
		float	wave
	)

Definition at line 17 of file convert_band.c.

convl12()

int convl12	(	l1str *	l1rec,
		l2str *	l2rec,
		int32_t	spix,
		int32_t	epix,
		aestr *	aerec
	)

Definition at line 16 of file convl12.c.

convl21()

int convl21	(	l2str *	l2rec,
		tgstr *	tgrec,
		int32_t	spix,
		int32_t	epix,
		float *	Lt,
		vcstr *	vrec
	)

Definition at line 15 of file convl21.c.

cpl1rec()

void cpl1rec	(	l1str *	l1new,
		l1str *	l1old
	)

Definition at line 6 of file cpl1rec.c.

destroy_geom_per_band()

int destroy_geom_per_band

(

geom_struc *

)

easternmost()

float32 easternmost	(	float32	lon1,
		float32	lon2
	)

Definition at line 37 of file scene_meta.c.

elev_init()

void elev_init	(	char *	elevFilename,
		char *	elevAuxFilename
	)

Definition at line 66 of file elev.c.

esdist_()

double esdist_	(	int32_t *	year,
		int32_t *	day,
		int32_t *	msec
	)

fclean()

void fclean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	flag,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 534 of file filter.c.

fctl_init()

void fctl_init

(

fctlstr *

fctl

)

Definition at line 19 of file filter.c.

fctl_set()

int fctl_set	(	fctlstr *	fctl,
		int32_t	npix,
		char *	fname,
		int32_t	band,
		int32_t	nx,
		int32_t	ny,
		int32_t	minfill,
		int32_t	nbands
	)

Definition at line 92 of file filter.c.

fdilate()

void fdilate	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	flag,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 361 of file filter.c.

fEPSiqmean()

void fEPSiqmean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 1247 of file filter.c.

fEPSmean()

void fEPSmean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 851 of file filter.c.

filehandle_init()

void filehandle_init

(

filehandle *

file

)

Definition at line 4 of file filehandle_init.c.

filter()

void filter	(	fctlstr *	fctl,
		l1qstr *	l1que,
		l1str *	l1rec,
		int32_t	dscan
	)

Definition at line 1396 of file filter.c.

flag_bowtie_deleted()

void flag_bowtie_deleted	(	l1str *	l1rec,
		size_t	ipix,
		int	extract_offset
	)

Definition at line 879 of file l1b_viirs_nc.c.

fLTmean()

void fLTmean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 614 of file filter.c.

fLTmed()

void fLTmed	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 1020 of file filter.c.

fLTrat()

void fLTrat	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		l1str *	l1rec
	)

fLTRiqmean()

void fLTRiqmean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 1164 of file filter.c.

fLTRmean()

void fLTRmean	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 671 of file filter.c.

fLTRmed()

void fLTRmed	(	l1qstr *	l1que,
		int32_t	nx,
		int32_t	ny,
		int	ib,
		int32_t	minfill,
		char	kernel[],
		l1str *	l1rec
	)

Definition at line 1091 of file filter.c.

foqint_morel()

void foqint_morel	(	char *	file,
		float	wave[],
		int32_t	nwave,
		float	solz,
		float	senzp,
		float	phi,
		float	chl,
		float	brdf[]
	)

Definition at line 314 of file brdf.c.

free_deminfo()

void free_deminfo

(

)

Definition at line 224 of file get_nc_height.c.

free_l1()

void free_l1

(

l1str *

l1rec

)

Definition at line 8 of file alloc_l1.c.

free_l1q()

void free_l1q

(

void

)

Definition at line 13 of file getl1rec.c.

free_l2()

void free_l2

(

l2str *

l2rec

)

Definition at line 7 of file alloc_l2.c.

fresnel_coef()

float fresnel_coef	(	float	mu,
		float	n
	)

Definition at line 1027 of file aerosol.c.

fresnel_sen()

float fresnel_sen	(	float	senz,
		int	return_tf
	)

Definition at line 127 of file brdf.c.

fresnel_sol()

void fresnel_sol	(	float	wave[],
		int32_t	nwave,
		float	solz,
		float	ws,
		float	brdf[],
		int	return_tf
	)

Definition at line 160 of file brdf.c.

gaseous_transmittance()

void gaseous_transmittance	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 438 of file gas_trans.c.

geom_per_band_deriv()

int geom_per_band_deriv

(

l1str *

)

Definition at line 52 of file geom_per_band.c.

get_angstrom()

void get_angstrom	(	l2str *	l2rec,
		int	band,
		float	angst[]
	)

Definition at line 4737 of file aerosol.c.

get_aphstar()

float get_aphstar	(	float	wave,
		int	dwave,
		int	ftype,
		float	proxy
	)

Definition at line 296 of file aph.c.

get_aw_bbw()

void get_aw_bbw	(	l2str *	l2rec,
		float	wave[],
		int	nwave,
		float *	aw,
		float *	bbw
	)

Definition at line 179 of file water_spectra.c.

get_bbp_las()

int get_bbp_las	(	l2str *	l2rec,
		int	ip,
		float	tab_wave[],
		float	tab_bbp[],
		int	tab_nwave
	)

Definition at line 605 of file las_iop.c.

get_bbp_las_eta()

float get_bbp_las_eta	(	l2str *	l2rec,
		int	ip
	)

Definition at line 627 of file las_iop.c.

get_bbp_las_eta_ksm()

float get_bbp_las_eta_ksm	(	l2str *	l2rec,
		int	ip
	)

Definition at line 745 of file las_iop_ksm.c.

get_bbp_qaa()

int get_bbp_qaa	(	l2str *	l2rec,
		int	ip,
		float	tab_wave[],
		float	tab_bbp[],
		int	tab_nwave
	)

Definition at line 367 of file get_qaa.c.

get_bbws()

void get_bbws	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

function to return spectral slope parameter for bbw

Parameters

l2rec	l2rec structure
p	product sturcture
prod	output bbw slope parameter

The slope is computed on the log transformed data for the visible wavelengths only. This works, because bbw can be approximated by a power function.

Definition at line 254 of file seawater.c.

get_bias_mean_sst()

float* get_bias_mean_sst

(

l2str *

l2rec

)

Definition at line 7657 of file sst.c.

get_bias_mean_sst4()

float* get_bias_mean_sst4

(

l2str *

l2rec

)

Definition at line 7670 of file sst.c.

get_bias_mean_sst_triple()

float* get_bias_mean_sst_triple

(

l2str *

l2rec

)

Definition at line 7688 of file sst.c.

get_bias_sst()

float* get_bias_sst

(

l2str *

l2rec

)

Definition at line 7391 of file sst.c.

get_bias_sst4()

float* get_bias_sst4

(

l2str *

l2rec

)

Definition at line 7404 of file sst.c.

get_bias_sst_triple()

float* get_bias_sst_triple

(

l2str *

l2rec

)

Definition at line 7422 of file sst.c.

get_bpar()

void get_bpar	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 482 of file get_bpar.c.

get_bsi()

void get_bsi	(	l2str *	l2rec,
		float	BSi[]
	)

get_carder()

void get_carder	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 957 of file carder.c.

get_cdom_morel()

void get_cdom_morel	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 319 of file cdom_morel.c.

get_chl()

void get_chl	(	l2str *	l2rec,
		int	prodnum,
		float	prod[]
	)

Definition at line 546 of file get_chl.c.

get_class_34k_w_owmc()

float* get_class_34k_w_owmc

(

l2str *

l2rec

)

Definition at line 214 of file get_owmc.c.

get_class_k_owmc()

float* get_class_k_owmc

(

l2str *

l2rec

)

Definition at line 209 of file get_owmc.c.

get_class_ward_owmc()

float* get_class_ward_owmc

(

l2str *

l2rec

)

Definition at line 204 of file get_owmc.c.

get_cldmask()

char get_cldmask	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 345 of file cloud_flag.c.

get_counts_sst()

int16* get_counts_sst

(

l2str *

l2rec

)

Definition at line 7449 of file sst.c.

get_counts_sst4()

int16* get_counts_sst4

(

l2str *

l2rec

)

Definition at line 7461 of file sst.c.

get_counts_sst_triple()

int16* get_counts_sst_triple

(

l2str *

l2rec

)

Definition at line 7474 of file sst.c.

get_default_chl()

float get_default_chl	(	l2str *	l2rec,
		float	Rrs[]
	)

Definition at line 478 of file get_chl.c.

get_depth()

void get_depth	(	l2str *	l2rec,
		float	depth[]
	)

Definition at line 20 of file get_depth.c.

get_dust_index()

void get_dust_index	(	l2str *	l2rec,
		float	dust[]
	)

get_elev()

float get_elev	(	float	lat,
		float	lon
	)

Definition at line 108 of file elev.c.

get_es()

void get_es	(	l2str *	l2rec,
		int	band,
		float	Es[]
	)

now returns in W/m2/um

Definition at line 24 of file get_es.c.

get_evi()

void get_evi	(	l1str *	l1rec,
		float	evi[]
	)

Definition at line 63 of file get_ndvi.c.

get_evi2()

void get_evi2	(	l1str *	l1rec,
		float	evi2[]
	)

Definition at line 122 of file get_ndvi.c.

get_evi3()

void get_evi3	(	l1str *	l1rec,
		float	evi3[]
	)

Definition at line 156 of file get_ndvi.c.

get_f0_neckel()

int get_f0_neckel	(	int32_t	wl,
		int32_t	width,
		float *	f0
	)

Definition at line 5 of file get_f0.c.

get_f0_thuillier()

int get_f0_thuillier	(	int32_t	wl,
		int32_t	width,
		float *	f0
	)

Definition at line 71 of file get_f0.c.

get_f0_thuillier_ext()

void get_f0_thuillier_ext	(	int32_t	wl,
		int32_t	width,
		float *	f0
	)

Definition at line 137 of file get_f0.c.

get_fdiff()

void get_fdiff	(	l2str *	l2rec,
		float	fdiff[]
	)

get_flags_carder()

int16* get_flags_carder

(

l2str *

l2rec

)

Definition at line 948 of file carder.c.

get_flags_giop()

int16* get_flags_giop

(

l2str *

l2rec

)

Definition at line 2722 of file giop.c.

get_flags_habs()

uint8_t* get_flags_habs

(

l2str *

l2rec

)

Definition at line 664 of file get_habs.c.

get_flags_habs_mph()

uint8_t* get_flags_habs_mph

(

l2str *

l2rec

)

Definition at line 347 of file get_habs.c.

get_flags_niwa()

int16* get_flags_niwa

(

l2str *

l2rec

)

Definition at line 99 of file get_niwa_iop.c.

get_flags_qaa()

unsigned char* get_flags_qaa

(

l2str *

l2rec

)

Definition at line 253 of file get_qaa.c.

get_flags_sst()

int16* get_flags_sst

(

l2str *

l2rec

)

Definition at line 7561 of file sst.c.

get_flags_sst4()

int16* get_flags_sst4

(

l2str *

l2rec

)

Definition at line 7574 of file sst.c.

get_flags_sst_triple()

int16* get_flags_sst_triple

(

l2str *

l2rec

)

Definition at line 7592 of file sst.c.

get_flh()

void get_flh	(	l2str *	l2rec,
		float	flh[]
	)

get_flh - calls the appropriate flh function for the given mission

Parameters

l2rec
flh

Definition at line 269 of file fluorescence.c.

get_fpm_xcal()

double* get_fpm_xcal

(

char *

fpm_file

)

Definition at line 331 of file xcal.c.

get_fqy()

void get_fqy	(	l2str *	l2rec,
		float	fqy[]
	)

get_fqy - calls the appropriate fluorescense quantum yeild function for the given mission

Parameters

l2rec
fqy

Definition at line 251 of file fluorescence.c.

get_fqy2()

void get_fqy2	(	l2str *	l2rec,
		float	fqy[]
	)

get_fsat()

void get_fsat	(	l2str *	l2rec,
		float	flh[]
	)

get_fsat - calls the appropriate fsat function for the given mission "fsat" is the flh algorithm described in Behrenfeld 2009 (doi:10.5194/bg-6-779-2009)

Parameters

l2rec
flh

Definition at line 289 of file fluorescence.c.

get_fsat2()

void get_fsat2	(	l2str *	l2rec,
		float	flh[]
	)

get_giop()

void get_giop	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 2538 of file giop.c.

get_gsm()

void get_gsm	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 717 of file gsm.c.

get_habs_ci()

void get_habs_ci	(	l2str *	l2rec,
		l2prodstr *	p,
		float	ci[]
	)

Definition at line 80 of file get_habs.c.

get_habs_mph()

void get_habs_mph	(	l2str *	l2rec,
		l2prodstr *	p,
		float	mph_chl[]
	)

Definition at line 252 of file get_habs.c.

get_height()

int get_height	(	char *	demfile,
		l1str *	l1rec,
		int32_t	ip,
		int	terrain_corrected
	)

Load DEM height for one pixel

Parameters

[in]	demfile
[in,out]	l1str
[in]	ip
[in]	terrain_corrected

Returns

Definition at line 34 of file get_height.c.

get_ice_frac()

void get_ice_frac	(	l2str *	l2rec,
		float	ice[]
	)

Definition at line 17 of file get_ice_frac.c.

get_iops()

void get_iops	(	l2str *	l2rec,
		int32_t	iop_opt
	)

Definition at line 113 of file convl12.c.

get_ipar()

void get_ipar	(	l2str *	l2rec,
		float	ipar[]
	)

Definition at line 18 of file ipar.c.

get_ipar2()

void get_ipar2	(	l2str *	l2rec,
		float	ipar[]
	)

get_iter_giop()

int16* get_iter_giop

(

l2str *

l2rec

)

Definition at line 2710 of file giop.c.

get_iter_gsm()

int16* get_iter_gsm

(

l2str *

l2rec

)

Definition at line 875 of file gsm.c.

get_Kd()

void get_Kd	(	l2str *	l2rec,
		l2prodstr *	p,
		float	Kd[]
	)

Definition at line 981 of file get_Kd.c.

get_l2prod_index()

l2prodstr* get_l2prod_index	(	char *	name,
		int32	sensorID,
		int32	numBands,
		int32	numPixels,
		int32	numScans,
		int32_t *	wave
	)

get_las()

void get_las	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 492 of file las_iop.c.

get_mgiop()

void get_mgiop	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 10 of file mgiop.c.

get_mld()

float get_mld	(	char *	mldfile,
		float	lon,
		float	lat,
		int	day
	)

Definition at line 347 of file get_mld.cpp.

get_modis_calfile()

int32 get_modis_calfile	(	int32	sd_id,
		char *	file
	)

get_ms_epsilon()

void get_ms_epsilon	(	l2str *	l2rec,
		float	eps[]
	)

Definition at line 4785 of file aerosol.c.

get_ndvi()

void get_ndvi	(	l1str *	l1rec,
		float	ndvi[]
	)

Definition at line 31 of file get_ndvi.c.

get_ndvi_evi()

void get_ndvi_evi	(	l1str *	l1rec,
		int	prodnum,
		float	prod[]
	)

Definition at line 203 of file get_ndvi.c.

get_niwa()

void get_niwa	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 67 of file get_niwa_iop.c.

get_npp()

void get_npp	(	l2str *	l2rec,
		int32_t	,
		float	prod[]
	)

get_par()

void get_par	(	l2str *	l2rec,
		float	par[]
	)

Definition at line 34 of file get_par.c.

get_pft_hirata()

void get_pft_hirata	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 145 of file get_pft_hirata.c.

get_pft_uitz()

void get_pft_uitz	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 387 of file get_pft_uitz.c.

get_photic_depth()

void get_photic_depth	(	l2str *	l2rec,
		l2prodstr *	p,
		float	Z[]
	)

Definition at line 303 of file photic_depth.c.

get_pml()

void get_pml	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 268 of file get_pml.c.

get_poc()

void get_poc	(	l2str *	l2rec,
		int	prodnum,
		float	prod[]
	)

Definition at line 81 of file get_poc.c.

get_psd_ksm()

void get_psd_ksm	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 432 of file get_psd_ksm.c.

get_qaa()

void get_qaa	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 260 of file get_qaa.c.

get_qual_sst()

int8* get_qual_sst

(

l2str *

l2rec

)

Definition at line 7517 of file sst.c.

get_qual_sst4()

int8* get_qual_sst4

(

l2str *

l2rec

)

Definition at line 7530 of file sst.c.

get_qual_sst_triple()

int8* get_qual_sst_triple

(

l2str *

l2rec

)

Definition at line 7548 of file sst.c.

get_rho_mumm()

void get_rho_mumm	(	l2str *	l2rec,
		int32_t	ip,
		int32_t	iw,
		float *	rhom
	)

Definition at line 25 of file mumm.c.

get_rhos()

int get_rhos	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 23 of file get_rhos.c.

get_rhown_eval()

void get_rhown_eval	(	char *	fqfile,
		float	Rrs[],
		float	wave[],
		int32_t	nir_s,
		int32_t	nir_l,
		int32_t	nwave,
		float	aw[],
		float	bbw[],
		float	chl,
		float	solz,
		float	senz,
		float	phi,
		float	rhown[]
	)

Definition at line 218 of file get_rhown_nir.c.

get_rhown_mumm()

void get_rhown_mumm	(	l2str *	l2rec,
		int32_t	ip,
		int32_t	nir_s,
		int32_t	nir_l,
		float	rhown[]
	)

Definition at line 74 of file mumm.c.

get_rhown_nir()

void get_rhown_nir	(	char *	fqfile,
		float	Rrs[],
		float	wave[],
		int32_t	nir_s,
		int32_t	nir_l,
		float	aw[],
		float	bbw[],
		float	chl,
		float	rhown[]
	)

get_smoke()

void get_smoke	(	l2str *	l2rec,
		float	smoke[]
	)

Definition at line 20 of file get_smoke.c.

get_ssn()

void get_ssn	(	l2str *	l2rec,
		float	ssn[]
	)

get_sssref()

float get_sssref	(	char *	file,
		float	lon,
		float	lat,
		int	day
	)

Definition at line 360 of file sssref.c.

get_sst()

float* get_sst

(

l2str *

l2rec

)

Definition at line 7605 of file sst.c.

get_sst4()

float* get_sst4

(

l2str *

l2rec

)

Definition at line 7624 of file sst.c.

get_sst_dust_correction()

float* get_sst_dust_correction

(

l2str *

l2rec

)

Definition at line 7379 of file sst.c.

get_sst_triple()

float* get_sst_triple

(

l2str *

l2rec

)

Definition at line 7643 of file sst.c.

get_sstref()

float get_sstref	(	short	reftyp,
		char *	file,
		l1str *	l1rec,
		int32_t	ip
	)

Definition at line 1592 of file sstref.c.

get_stdv_sst()

float* get_stdv_sst

(

l2str *

l2rec

)

Definition at line 7436 of file sst.c.

get_stdv_sst4()

float* get_stdv_sst4

(

l2str *

l2rec

)

Definition at line 7487 of file sst.c.

get_stdv_sst_triple()

float* get_stdv_sst_triple

(

l2str *

l2rec

)

Definition at line 7504 of file sst.c.

get_swim()

void get_swim	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 741 of file swim.c.

get_tauc()

void get_tauc	(	l2str *	l2rec,
		float	tauc[]
	)

get_toa_refl()

void get_toa_refl	(	l2str *	l2rec,
		int	band,
		float	rhot[]
	)

Definition at line 19 of file get_toa_refl.c.

get_tsm()

void get_tsm	(	l2str *	l2rec,
		int	prodnum,
		float	prod[]
	)

get_um_prod_()

void get_um_prod_	(	int32_t *	idProd,
		int32_t *	pix,
		float *	val
	)

get_xcal()

double* get_xcal	(	l1str *	l1rec,
		int	type,
		int	bandnum
	)

Definition at line 30 of file xcal.c.

getglint_()

int getglint_	(	float *	,
		float *	,
		float *	,
		float *	,
		float *	,
		float *
	)

getglint_iqu_()

int getglint_iqu_	(	float *	,
		float *	,
		float *	,
		float *	,
		float *	,
		float *	,
		float *	,
		float *
	)

getl1rec()

int getl1rec	(	int32_t	recnum,
		int32_t	dscan,
		l1str *	l1rec
	)

Definition at line 119 of file getl1rec.c.

giop_get_adg_pointer()

float* giop_get_adg_pointer

(

)

Definition at line 2768 of file giop.c.

giop_get_aph_pointer()

float* giop_get_aph_pointer

(

)

Definition at line 2782 of file giop.c.

giop_get_bbp_pointer()

float* giop_get_bbp_pointer

(

)

Definition at line 2775 of file giop.c.

giop_get_bbp_s_pointer()

float* giop_get_bbp_s_pointer

(

)

Definition at line 2797 of file giop.c.

giop_ran()

int giop_ran

(

int

recnum

)

Definition at line 569 of file giop.c.

glint_rad()

void glint_rad	(	int32_t	num_iter,
		int32_t	nband,
		int32_t	nir_s,
		int32_t	nir_l,
		float	glint_coef,
		float	air_mass,
		float	mu0,
		float	F0[],
		float	taur[],
		float	taua[],
		float	La[],
		float	TLg[]
	)

Definition at line 40 of file glint.c.

gothic_R()

void gothic_R	(	float	wave[],
		int32_t	nwave,
		float	solz,
		float	senz,
		float	ws,
		float	R[]
	)

Definition at line 266 of file brdf.c.

ice_fraction()

float ice_fraction	(	float	lon,
		float	lat
	)

function to return the ice fraction

Parameters

lon	longitude of interest
lat	latitude of interest

Returns

ice fraction coverage at this position (range of 0 to 1)

Definition at line 1017 of file ice_mask.c.

ice_mask()

char ice_mask	(	float	lon,
		float	lat
	)

Get the ice mask at this location. 1=ice, 0=water

Parameters

lon	longitude of interest
lat	latitude of interest

Returns

1 if icefrac above ice threshold else return 0

Definition at line 992 of file ice_mask.c.

ice_mask_init()

int ice_mask_init	(	char *	file,
		int	year,
		int	day,
		float	threshold
	)

Definition at line 899 of file ice_mask.c.

init_geom_per_band()

int init_geom_per_band

(

l1str *

)

Definition at line 8 of file geom_per_band.c.

init_l1()

void init_l1

(

l1str *

l1rec

)

Definition at line 12 of file init_l1.c.

init_l2()

void init_l2	(	l2str *	l2rec,
		int32_t	nbands
	)

Definition at line 11 of file init_l2.c.

init_l2prod()

void init_l2prod

(

)

Definition at line 222 of file get_l2prod_index.c.

invbindx()

int invbindx	(	int	band,
		int32_t *	bindx,
		int	nbands
	)

Definition at line 104 of file windex.c.

iops_carder()

void iops_carder

(

l2str *

l2rec

)

Definition at line 1013 of file carder.c.

iops_giop()

void iops_giop

(

l2str *

l2rec

)

Definition at line 2734 of file giop.c.

iops_gsm()

void iops_gsm

(

l2str *

l2rec

)

Definition at line 885 of file gsm.c.

iops_las()

void iops_las

(

l2str *

l2rec

)

Definition at line 581 of file las_iop.c.

iops_niwa()

void iops_niwa

(

l2str *

l2rec

)

Definition at line 109 of file get_niwa_iop.c.

iops_pml()

void iops_pml

(

l2str *

l2rec

)

Definition at line 313 of file get_pml.c.

iops_qaa()

void iops_qaa

(

l2str *

l2rec

)

Definition at line 335 of file get_qaa.c.

iops_swim()

void iops_swim

(

l2str *

l2rec

)

Definition at line 799 of file swim.c.

ky_airmass()

float ky_airmass

(

float

theta

)

Definition at line 4 of file airmass.c.

l1_mask_set()

void l1_mask_set	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 23 of file setflags.c.

l1b_seawifs()

int32 l1b_seawifs	(	filehandle *	l1file,
		filehandle *	ofile,
		int32	sscan,
		int32	escan,
		int32	dscan,
		int32	spixl,
		int32	epixl,
		int32	dpixl
	)

l1subpix()

int l1subpix	(	filehandle *	l1file,
		l1str *	l1rec
	)

Definition at line 19 of file l1subpix.c.

l2_seawifs()

int32 l2_seawifs	(	filehandle *	l1file,
		filehandle *	l2file
	)

l2gen_init_options()

int l2gen_init_options	(	clo_optionList_t *	list,
		const char *	prog
	)

add all of the accepted command line options to list

Definition at line 717 of file msl12_input.c.

l2gen_usage()

int l2gen_usage

(

const char *

prog

)

Definition at line 4775 of file msl12_input.c.

land_mask()

int land_mask	(	float	lat,
		float	lon
	)

Definition at line 31 of file read_mask.c.

land_mask_init()

int land_mask_init

(

char *

file

)

Definition at line 14 of file read_mask.c.

loadl1()

int loadl1	(	filehandle *	l1file,
		l1str *	l1rec
	)

Definition at line 198 of file loadl1.c.

lowercase()

void lowercase

(

char *

s

)

modis_cirrus_mask()

int modis_cirrus_mask	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 94 of file cloud_flag.c.

modis_cloud_mask()

int modis_cloud_mask	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 9 of file cloud_flag.c.

msl12_input()

int msl12_input	(	int	argc,
		char *	argv[],
		const char *	progName,
		filehandle *	l1file
	)

Definition at line 4722 of file msl12_input.c.

msl12_input_defaults()

int msl12_input_defaults

(

filehandle *

l1file

)

Definition at line 4746 of file msl12_input.c.

msl12_input_init()

void msl12_input_init

(

)

Definition at line 506 of file msl12_input.c.

msl12_option_input()

int msl12_option_input	(	int	argc,
		char *	argv[],
		clo_optionList_t *	list,
		char *	progName,
		filehandle *	l1file
	)

ncio_dim_siz()

int ncio_dim_siz	(	int	,
		char *
	)

Definition at line 18 of file ncio.c.

ncio_grab_f_ds()

int ncio_grab_f_ds	(	int	,
		char *	,
		float *
	)

Definition at line 57 of file ncio.c.

ncio_grab_stdsclf_ds()

int ncio_grab_stdsclf_ds	(	int	,
		char *	,
		float	,
		float *
	)

Definition at line 101 of file ncio.c.

nlw_outband()

void nlw_outband	(	int32_t	evalmask,
		int32_t	sensorID,
		float	wave[],
		int32_t	nwave,
		float	Lw[],
		float	nLw[]
	)

Definition at line 3 of file nlw_outband.c.

ocbrdf()

int ocbrdf	(	l2str *	l2rec,
		int32_t	ip,
		int32_t	brdf_opt,
		float	wave[],
		int32_t	nwave,
		float	solz,
		float	senz,
		float	phi,
		float	ws,
		float	chl,
		float	nLw[],
		float	Fo[],
		float	brdf[]
	)

Definition at line 40 of file brdf.c.

open_aer()

int open_aer

(

filehandle *

file

)

Definition at line 73 of file aer_io.c.

open_target()

int open_target

(

filehandle *

file

)

Definition at line 77 of file target_io.c.

openl1()

int openl1

(

filehandle *

l1file

)

Definition at line 207 of file l1_io.c.

openl1_read_hdf()

int openl1_read_hdf

(

filehandle *

l1file

)

openl1_write()

int openl1_write

(

filehandle *

l1file

)

Definition at line 174 of file l1_generic_write.c.

openl1_write_hdf()

int openl1_write_hdf

(

filehandle *

l1file

)

Definition at line 502 of file l1_hdf_generic_write.c.

openl2()

int openl2

(

filehandle *

l2file

)

Definition at line 220 of file l2_generic.c.

optical_class()

void optical_class	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

optical_water_type()

void optical_water_type	(	l2str *	l2rec,
		l2prodstr *	p,
		void *	vptr
	)

Definition at line 325 of file owt.c.

polcor()

void polcor	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 15 of file polcor.c.

pp_airmass()

float pp_airmass

(

float

theta

)

Definition at line 14 of file airmass.c.

prodgen()

VOIDP prodgen	(	l2prodstr *	p,
		l2str *	l2rec
	)

Definition at line 89 of file prodgen.c.

prodlist()

int32 prodlist	(	int32	sensorID,
		int32	evalmask,
		const char *	inprod,
		const char *	defprod,
		char	outprod[MAXPROD][32]
	)

Definition at line 3 of file prodlist.c.

qint_morel()

void qint_morel	(	float	wave[],
		int32_t	nwave,
		float	solz,
		float	chl,
		float	Qn[]
	)

Definition at line 672 of file brdf.c.

radiance2bt()

void radiance2bt	(	l1str *	l1rec,
		int	resolution
	)

Definition at line 168 of file brightness.c.

rayleigh()

void rayleigh	(	l1str *	l1rec,
		int32_t	ip
	)

Definition at line 42 of file rayleigh.c.

rdfilter()

int rdfilter	(	char *	file,
		fctlstr *	fctl,
		int32_t	nbands
	)

Definition at line 300 of file filter.c.

rdsensorinfo()

int32_t rdsensorinfo	(	int32_t	sensorID,
		int32_t	evalmask,
		const char *	pname,
		void **	pval
	)

lookup information about a sensor.

Parameters

sensorID	id of the sensor to lookup
evalmask	set to 32 to get info out of the "eval" directory
pname	name of the parameter to retrieve
pval	pointer to the requested data

Returns

the number of bands, -1 if error

Definition at line 69 of file rdsensorinfo.c.

read_aer()

int read_aer	(	filehandle *	file,
		int32_t	recnum,
		aestr *	aerec
	)

Definition at line 99 of file aer_io.c.

read_target()

int read_target	(	filehandle *	file,
		int32_t	recnum,
		tgstr *	tgrec
	)

Definition at line 103 of file target_io.c.

read_target_l3()

int read_target_l3	(	filehandle *	file,
		l1str *	l1rec,
		int32_t	nbands,
		tgstr *	tgrec
	)

read_target_l3 - loads a vicarous calibration target record, applying band shifting if necessary

Parameters

file	- filehandle structure for L3 bin target file
l1rec
nbands
tgrec

Returns

Definition at line 207 of file target_io.c.

readl1()

int readl1	(	filehandle *	l1file,
		int32_t	recnum,
		l1str *	l1rec
	)

Definition at line 400 of file l1_io.c.

readl1_lonlat()

int readl1_lonlat	(	filehandle *	l1file,
		int32_t	recnum,
		l1str *	l1rec
	)

Definition at line 587 of file l1_io.c.

rrs_above_to_below()

float rrs_above_to_below

(

float

Rrs

)

Definition at line 1598 of file giop.c.

run_giop()

void run_giop

(

l2str *

l2rec

)

Definition at line 1616 of file giop.c.

run_raman_cor()

void run_raman_cor	(	l2str *	l2rec,
		int	ip
	)

Definition at line 1069 of file raman.c.

seawater_bb()

float seawater_bb	(	float	wave,
		float	sst,
		float	sss,
		double	delta
	)

Definition at line 176 of file seawater.c.

seawater_get_a()

float seawater_get_a	(	int32_t	ip,
		int32_t	ib
	)

Definition at line 21 of file seawater_get.c.

seawater_get_bb()

float seawater_get_bb	(	int32_t	ip,
		int32_t	ib
	)

Definition at line 25 of file seawater_get.c.

seawater_get_n()

float seawater_get_n	(	int32_t	ip,
		int32_t	ib
	)

Definition at line 17 of file seawater_get.c.

seawater_nsw()

float seawater_nsw	(	float	wave,
		float	sst,
		float	sss,
		float *	dnswds
	)

Definition at line 8 of file seawater.c.

seawater_set()

void seawater_set

(

l1str *

l1rec

)

Definition at line 8 of file seawater_get.c.

set_iop_flag()

void set_iop_flag	(	float32	wave[],
		int32	nwave,
		float32	a[],
		float32	aph[],
		float32	adg[],
		float32	bb[],
		float32	bbp[],
		int16 *	flag
	)

setanc()

int setanc

(

l1str *

l1rec

)

Definition at line 563 of file setanc.c.

setflagbits()

void setflagbits	(	int	level,
		l1str *	l1rec,
		l2str *	l2rec,
		int32_t	ipix
	)

Definition at line 168 of file setflags.c.

setflags()

int setflags

(

l1str *

l1rec

)

Definition at line 36 of file setflags.c.

sunangs_()

void sunangs_	(	int *	iyr,
		int *	iday,
		float *	gmt,
		float *	xlon,
		float *	ylat,
		float *	sunz,
		float *	suna
	)

tindx_morel()

void tindx_morel	(	l2str *	l2rec,
		int32_t	ip,
		float *	tindx
	)

Definition at line 65 of file turbid.c.

tindx_shi()

void tindx_shi	(	l2str *	l2rec,
		int32_t	ip,
		float *	tindx
	)

Definition at line 4 of file turbid.c.

update_flag_cnts()

void update_flag_cnts	(	int32_t *	flag_cnt,
		int32_t *	flags,
		int32_t	nflags,
		int32_t	npix,
		uint32_t	init_mask
	)

Definition at line 1491 of file l2_generic.c.

update_flag_cnts16()

void update_flag_cnts16	(	int32_t *	flag_cnt,
		int16_t *	flags,
		int32_t	nflags,
		int32_t	npix,
		uint32_t	init_mask
	)

Definition at line 1506 of file l2_generic.c.

update_qual_cnts()

void update_qual_cnts	(	int32_t *	flag_cnt,
		int8_t *	flags,
		int32_t	nflags,
		int32_t	npix
	)

Definition at line 1521 of file l2_generic.c.

vcal()

void vcal	(	l2str *	l2rec,
		l2prodstr *	p,
		float	vcal[]
	)

Definition at line 25 of file vcal.c.

viirs_pxcvt_2ag()

void viirs_pxcvt_2ag	(	int	,
		int *
	)

Definition at line 62 of file viirs_pxcvt.c.

viirs_pxcvt_2uag()

void viirs_pxcvt_2uag	(	int	,
		int *	,
		int *
	)

Definition at line 11 of file viirs_pxcvt.c.

viirs_pxcvt_agdel()

void viirs_pxcvt_agdel	(	int	,
		int	,
		int *
	)

Definition at line 106 of file viirs_pxcvt.c.

virtual_constellation()

void virtual_constellation	(	l2str *	l2rec,
		l2prodstr *	p,
		float	prod[]
	)

Definition at line 296 of file virtual_constellation.c.

water_vapor()

float water_vapor	(	int	ib,
		float	wv,
		float	airmass
	)

Definition at line 4 of file water_vapor.c.

westernmost()

float32 westernmost	(	float32	lon1,
		float32	lon2
	)

Definition at line 28 of file scene_meta.c.

whitecaps()

void whitecaps	(	int32_t	sensorID,
		int32_t	evalmask,
		int32_t	nwave,
		float	ws,
		float	ws_max,
		float	rhof[]
	)

Definition at line 51 of file whitecaps.c.

windex()

int windex	(	float	wave,
		float	twave[],
		int	ntwave
	)

Definition at line 71 of file windex.c.

windex_get()

int windex_get

(

int32_t

wave

)

write_flag_pcnts()

int write_flag_pcnts	(	idDS	ds_id,
		FILE *	fpmeta,
		int32_t *	flag_cnt,
		int32_t	nflags,
		const char *const	flag_lname[],
		int32_t	numScans,
		int32_t	numPixels
	)

Definition at line 1536 of file l2_generic.c.

write_product_XML_file()

void write_product_XML_file

(

char *

filename

)

Definition at line 505 of file get_l2prod_index.c.

write_qual_flag_pcnts()

int write_qual_flag_pcnts	(	idDS	ds_id,
		FILE *	fpmeta,
		int32_t *	flag_cnt,
		int32_t	nflags,
		const char *const	flag_lname[]
	)

Definition at line 1556 of file l2_generic.c.

writel1()

int writel1	(	filehandle *	l1file,
		int32_t	recnum,
		l1str *	l1rec
	)

Definition at line 646 of file l1_generic_write.c.

writel1_hdf()

int writel1_hdf	(	filehandle *	l1file,
		int32_t	recnum,
		l1str *	l1rec
	)

Definition at line 618 of file l1_hdf_generic_write.c.

writel2()

int writel2	(	filehandle *	l2file,
		int32_t	recnum,
		l2str *	l2rec,
		int	outfile_number
	)

Definition at line 953 of file l2_generic.c.

Variable Documentation

input

instr* input

Definition at line 27 of file main_l2binmatch.cpp.