Silvia,
I'm not sure I understand the question. You can produce QAA and GSM products using l2gen in SeaDAS by processing level-1 data to level-2 and specifying (or selecting within the GUI) those products for output (e.g., aph_443_qaa, aph_443_gsm, ...).
The CDOM_index products is from:
Andre Morel, Bernard Gentili, A simple band ratio technique to quantify the colored dissolved and detrital organic material from ocean color remotely sensed data, Remote Sensing of Environment, Volume 113, Issue 5, 15 May 2009, Pages 998-1011, ISSN 0034-4257, DOI: 10.1016/j.rse.2009.01.008.
http://dx.doi.org/10.1016/j.rse.2009.01.008